Publications

Liebergesell TCE, Murdock EG, & Puri AW. Detection of inverse stable isotopic labeling in untargeted metabolomic data. Anal Chem. 2024. 96(41):16330-16337.  https://doi.org/10.1021/acs.analchem.4c03528

Beals DG, Munn JJ, & Puri AW. Methane-oxidizing bacterial community dynamics in sub-alpine forest soil. Microbiol Spectr. 2024. 12:e00834-24. https://doi.org/10.1128/spectrum.00834-24

Liebergesell TCE & Puri AW. Linking biosynthetic genes to natural products using inverse stable isotopic labeling (InverSIL). Methods Enzymol. 2024. 702:215-227. https://doi.org/10.1016/bs.mie.2024.06.005

Beals DG & Puri AW. Agarose-Based Model Ecosystem for Cultivating Methanotrophs in a Methane-Oxygen Counter Gradient. J Vis Exp. 2024. 211: e67191. https://doi.org/10.3791/67191

Beals DG & Puri AW. Linking methanotroph phenotypes to genotypes using a simple spatially resolved model ecosystem. ISME J. 2024. 18(1):wrae060. https://doi.org/10.1093/ismejo/wrae060

Wallace M, Cummings DA Jr., Roberts AG, & Puri AW. A widespread methylotroph acyl-homoserine lactone synthase produces a new quorum sensing signal that regulates swarming in Methylobacterium fujisawaense. mBio. 2024. 5(1):e0199923. https://doi.org/10.1128/mbio.01999-23

Suo Z, Cummings DA Jr, Puri AW, Schaefer AL, & Greenberg EP. A Mesorhizobium japonicum quorum sensing circuit that involves three linked genes and an unusual acyl-homoserine lactone signal. mBio. 2023. 14(4): e0101023. https://doi.org/10.1128/mbio.01010-23

Nguyen NA, Cong Y, Hurrell RC, Arias N, Garg N, Puri AW, Schmidt EW, & Agarwal V. A Silent Biosynthetic Gene Cluster from a Methanotrophic Bacterium Potentiates Discovery of a Substrate Promiscuous Proteusin Cyclodehydratase. ACS Chem Biol. 2022. 17: 1577-1585. https://doi.org/10.1021/acschembio.2c00251

Robes JMD, Altamia MA, Murdock EG, Concepcion GP, Haygood MG, & Puri AW.
A conserved biosynthetic gene cluster is regulated by quorum sensing in a shipworm symbiont. Appl Environ Microbiol. 2022. 88: e00270-22. https://doi.org/10.1128/aem.00270-22

Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA Jr, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, Navarro-Hoyos M, Jarmusch AK, Jarmusch SA, Louie K, Maloney KN, Marty MT, Meijler MM, Mizrahi I, Neve RL, Northen TR, Molina-Santiago C, Panitchpakdi M, Pullman B, Puri AW, Schmid R, Subramaniam S, Thukral M, Vasquez-Castro F, Dorrestein PC, & Wang M. GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nat Methods. 2022. 19: 134-136. https://doi.org/10.1038/s41592-021-01339-5

Cummings DA Jr., Snelling AI, & Puri AW. Methylotroph Quorum Sensing Signal Identification by Inverse Stable Isotopic Labeling. ACS Chem Biol. 2021.  16: 1332-1338. https://doi.org/10.1021/acschembio.1c00329

Puri AW. Specialized Metabolites from Methylotrophic Proteobacteria. Curr Issues Mol Biol. 2019. 33: 211-224. https://doi.org/10.21775/cimb.033.211